HL_4V61_040

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUGGAGUGC

Length

9 nucleotides

Bulged bases

4V61|1|BA|U|320

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_040 not in the Motif Atlas

Geometric match to HL_5TBW_050

Geometric discrepancy: 0.3591

The information below is about HL_5TBW_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

4V61|1|BA|G|314
4V61|1|BA|U|315
4V61|1|BA|G|316
4V61|1|BA|G|317
4V61|1|BA|A|318
4V61|1|BA|G|319
4V61|1|BA|U|320
4V61|1|BA|G|321
4V61|1|BA|C|322

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BW

Ribosomal Protein L24