HL_4V61_041

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUGAAAGUC

Length

9 nucleotides

Bulged bases

4V61|1|BA|G|338, 4V61|1|BA|A|339, 4V61|1|BA|A|340

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_041 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.4411

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

4V61|1|BA|G|336
4V61|1|BA|U|337
4V61|1|BA|G|338
4V61|1|BA|A|339
4V61|1|BA|A|340
4V61|1|BA|A|341
4V61|1|BA|G|342
4V61|1|BA|U|343
4V61|1|BA|C|344

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BG

Ribosomal Protein L4

Chain BW

Ribosomal Protein L24