HL_4V61_043

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

4V61|1|BA|G|423

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_043 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.152

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V61|1|BA|G|422
4V61|1|BA|G|423
4V61|1|BA|A|424
4V61|1|BA|C|425
4V61|1|BA|C|426
4V61|1|BA|A|427
4V61|1|BA|C|428
4V61|1|BA|C|429

Current chains

Chain BA

23S rRNA

Nearby chains