HL_4V61_046

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GACCAGAC

Length

8 nucleotides

Bulged bases

4V61|1|BA|C|557, 4V61|1|BA|A|560

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_046 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.4505

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V61|1|BA|G|554
4V61|1|BA|A|555
4V61|1|BA|C|556
4V61|1|BA|C|557
4V61|1|BA|A|558
4V61|1|BA|G|559
4V61|1|BA|A|560
4V61|1|BA|C|561

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BT

Ribosomal Protein L21