HL_4V61_050

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

UUCAUAG

Length

7 nucleotides

Bulged bases

4V61|1|BA|U|657

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_050 not in the Motif Atlas

Homologous match to HL_4WF9_021

Geometric discrepancy: 0.4762

The information below is about HL_4WF9_021

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

4V61|1|BA|U|653
4V61|1|BA|U|654
4V61|1|BA|C|655
4V61|1|BA|A|656
4V61|1|BA|U|657
4V61|1|BA|A|658
4V61|1|BA|G|659

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B3

Ribosomal Protein L33

Chain B5

Ribosomal Protein L35