HL_4V61_059

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_059 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.1712

The information below is about HL_6PRV_002

Detailed Annotation

GNRA with tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V61|1|BA|C|1120
4V61|1|BA|G|1121
4V61|1|BA|U|1122
4V61|1|BA|A|1123
4V61|1|BA|A|1124
4V61|1|BA|U|1125
4V61|1|BA|A|1126
4V61|1|BA|G|1127

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

Ribosomal Protein L36

Chain BI

Ribosomal Protein L6

Chain BK

Ribosomal Protein L11