HL_4V61_067

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

AGAGAAAAU

Length

9 nucleotides

Bulged bases

4V61|1|BA|A|1531, 4V61|1|BA|A|1535

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_067 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.1628

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

4V61|1|BA|A|1529
4V61|1|BA|G|1530
4V61|1|BA|A|1531
4V61|1|BA|G|1532
4V61|1|BA|A|1533
4V61|1|BA|A|1534
4V61|1|BA|A|1535
4V61|1|BA|A|1536
4V61|1|BA|U|1537

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

Ribosomal Protein L2