HL_4V61_074

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUUUACCAAAAAC

Length

13 nucleotides

Bulged bases

4V61|1|BA|A|1790, 4V61|1|BA|C|1791, 4V61|1|BA|C|1792, 4V61|1|BA|A|1796

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_074 not in the Motif Atlas

Homologous match to HL_7A0S_045

Geometric discrepancy: 0.2978

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.2

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4V61|1|BA|G|1786
4V61|1|BA|U|1787
4V61|1|BA|U|1788
4V61|1|BA|U|1789
4V61|1|BA|A|1790
4V61|1|BA|C|1791
4V61|1|BA|C|1792
4V61|1|BA|A|1793
4V61|1|BA|A|1794
4V61|1|BA|A|1795
4V61|1|BA|A|1796
4V61|1|BA|A|1797
4V61|1|BA|C|1798

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

Ribosomal Protein L2