HL_4V61_075

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

4V61|1|BA|U|1818

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_075 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.1524

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4V61|1|BA|C|1816
4V61|1|BA|G|1817
4V61|1|BA|U|1818
4V61|1|BA|A|1819
4V61|1|BA|A|1820
4V61|1|BA|G|1821

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BE

Ribosomal Protein L2

Chain BY

Ribosomal Protein L28