HL_4V61_078

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

4V61|1|BA|U|1969

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_078 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.1864

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V61|1|BA|G|1963
4V61|1|BA|G|1964
4V61|1|BA|U|1965
4V61|1|BA|A|1966
4V61|1|BA|A|1967
4V61|1|BA|G|1968
4V61|1|BA|U|1969
4V61|1|BA|U|1970
4V61|1|BA|C|1971

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BM

Ribosomal Protein L14