HL_4V61_079

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

4V61|1|BA|A|2044, 4V61|1|BA|A|2045, 4V61|1|BA|G|2046, 4V61|1|BA|U|2048, 4V61|1|BA|G|2049

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_079 not in the Motif Atlas

Homologous match to HL_7RQB_050

Geometric discrepancy: 0.3424

The information below is about HL_7RQB_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.6

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

6

Unit IDs

4V61|1|BA|G|2041
4V61|1|BA|U|2042
4V61|1|BA|G|2043
4V61|1|BA|A|2044
4V61|1|BA|A|2045
4V61|1|BA|G|2046
4V61|1|BA|A|2047
4V61|1|BA|U|2048
4V61|1|BA|G|2049
4V61|1|BA|C|2050

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

Ribosomal Protein L32

Chain BF

Ribosomal Protein L3