HL_4V61_083

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CCAAAAGGUAACG

Length

13 nucleotides

Bulged bases

4V61|1|BA|A|2284, 4V61|1|BA|A|2285, 4V61|1|BA|C|2292

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_083 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.1865

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V61|1|BA|C|2281
4V61|1|BA|C|2282
4V61|1|BA|A|2283
4V61|1|BA|A|2284
4V61|1|BA|A|2285
4V61|1|BA|A|2286
4V61|1|BA|G|2287
4V61|1|BA|G|2288
4V61|1|BA|U|2289
4V61|1|BA|A|2290
4V61|1|BA|A|2291
4V61|1|BA|C|2292
4V61|1|BA|G|2293

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BO

Ribosomal Protein L16

Chain BX

Ribosomal Protein L27