HL_4V61_087

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CGAGUGGAAG

Length

10 nucleotides

Bulged bases

4V61|1|BA|A|2423

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_087 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.155

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V61|1|BA|C|2421
4V61|1|BA|G|2422
4V61|1|BA|A|2423
4V61|1|BA|G|2424
4V61|1|BA|U|2425
4V61|1|BA|G|2426
4V61|1|BA|G|2427
4V61|1|BA|A|2428
4V61|1|BA|A|2429
4V61|1|BA|G|2430

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BN

Ribosomal Protein L15