HL_4V61_089

3D structure

PDB id

4V61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Homology model for the Spinach chloroplast 30S subunit fitted to 9.4A cryo-EM map of the 70S chlororibosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

9.4 Å

Loop

Sequence

CUGUAGUAUG

Length

10 nucleotides

Bulged bases

4V61|1|BA|G|2546

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V61_089 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1818

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V61|1|BA|C|2544
4V61|1|BA|U|2545
4V61|1|BA|G|2546
4V61|1|BA|U|2547
4V61|1|BA|A|2548
4V61|1|BA|G|2549
4V61|1|BA|U|2550
4V61|1|BA|A|2551
4V61|1|BA|U|2552
4V61|1|BA|G|2553

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B6

Ribosomal Protein L36

Chain BI

Ribosomal Protein L6