HL_4V65_023

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

4V65|1|A1|C|1267

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_023 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.5011

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

4V65|1|A1|C|1265
4V65|1|A1|G|1266
4V65|1|A1|C|1267
4V65|1|A1|G|1268
4V65|1|A1|A|1269
4V65|1|A1|G|1270

Current chains

Chain A1

16S rRNA

Nearby chains

Chain AF

30S ribosomal protein S13

Chain AL

30S ribosomal protein S19