HL_4V65_027

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

4V65|1|AA|U|17, 4V65|1|AA|G|18, 4V65|1|AA|G|19, 4V65|1|AA|G|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_027 not in the Motif Atlas

Homologous match to HL_4V90_032

Geometric discrepancy: 0.2774

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

4V65|1|AA|C|13
4V65|1|AA|A|14
4V65|1|AA|G|15
4V65|1|AA|U|16
4V65|1|AA|U|17
4V65|1|AA|G|18
4V65|1|AA|G|19
4V65|1|AA|G|20
4V65|1|AA|A|21
4V65|1|AA|G|22

Current chains

Chain AA

A/T, P and E-site tRNAs

Nearby chains

Chain AD

30S ribosomal protein S12

Chain BB

Large subunit ribosomal RNA; LSU rRNA