HL_4V65_028

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GACUGAAGAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_028 not in the Motif Atlas

Homologous match to HL_5IB8_208

Geometric discrepancy: 0.4724

The information below is about HL_5IB8_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36684.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V65|1|AA|G|30
4V65|1|AA|A|31
4V65|1|AA|C|32
4V65|1|AA|U|33
4V65|1|AA|G|34
4V65|1|AA|A|35
4V65|1|AA|A|36
4V65|1|AA|G|37
4V65|1|AA|A|38
4V65|1|AA|U|39
4V65|1|AA|C|40

Current chains

Chain AA

A/T, P and E-site tRNAs

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain AM

mRNA model