HL_4V65_030
3D structure
- PDB id
- 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome in the Pre-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CAGUUGGGAG
- Length
- 10 nucleotides
- Bulged bases
- 4V65|1|AE|U|16, 4V65|1|AE|U|17, 4V65|1|AE|G|18, 4V65|1|AE|G|19, 4V65|1|AE|G|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V65_030 not in the Motif Atlas
- Homologous match to HL_4V90_032
- Geometric discrepancy: 0.3497
- The information below is about HL_4V90_032
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_20811.4
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 14
Unit IDs
4V65|1|AE|C|13
4V65|1|AE|A|14
4V65|1|AE|G|15
4V65|1|AE|U|16
4V65|1|AE|U|17
4V65|1|AE|G|18
4V65|1|AE|G|19
4V65|1|AE|G|20
4V65|1|AE|A|21
4V65|1|AE|G|22
Current chains
- Chain AE
- A/T, P and E-site tRNAs
Nearby chains
- Chain BZ
- 50S ribosomal protein L1P
Coloring options: