HL_4V65_031
3D structure
- PDB id
- 4V65 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the E. coli ribosome in the Pre-accommodation state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- ACUGAAGAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V65_031 not in the Motif Atlas
- Homologous match to HL_6UFM_002
- Geometric discrepancy: 0.1885
- The information below is about HL_6UFM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V65|1|AE|A|31
4V65|1|AE|C|32
4V65|1|AE|U|33
4V65|1|AE|G|34
4V65|1|AE|A|35
4V65|1|AE|A|36
4V65|1|AE|G|37
4V65|1|AE|A|38
4V65|1|AE|U|39
Current chains
- Chain AE
- A/T, P and E-site tRNAs
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain AC
- 30S ribosomal protein S11
- Chain AM
- mRNA model
- Chain AP
- Transfer RNA; tRNA
- Chain AU
- 30S ribosomal protein S7
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