HL_4V65_040

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUUUCGAC

Length

8 nucleotides

Bulged bases

4V65|1|BB|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_040 not in the Motif Atlas

Geometric match to HL_7MLW_004

Geometric discrepancy: 0.3577

The information below is about HL_7MLW_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_83003.1

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

6

Unit IDs

4V65|1|BB|G|136
4V65|1|BB|U|137
4V65|1|BB|U|138
4V65|1|BB|U|139
4V65|1|BB|C|140
4V65|1|BB|G|141
4V65|1|BB|A|142
4V65|1|BB|C|143

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BM

50S ribosomal protein L23