HL_4V65_047

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGACACGUGGUAUCC

Length

15 nucleotides

Bulged bases

4V65|1|BB|G|386, 4V65|1|BB|U|387, 4V65|1|BB|G|388, 4V65|1|BB|G|389, 4V65|1|BB|U|392

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_047 not in the Motif Atlas

Geometric match to HL_8C3A_054

Geometric discrepancy: 0.1192

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V65|1|BB|G|380
4V65|1|BB|G|381
4V65|1|BB|A|382
4V65|1|BB|C|383
4V65|1|BB|A|384
4V65|1|BB|C|385
4V65|1|BB|G|386
4V65|1|BB|U|387
4V65|1|BB|G|388
4V65|1|BB|G|389
4V65|1|BB|U|390
4V65|1|BB|A|391
4V65|1|BB|U|392
4V65|1|BB|C|393
4V65|1|BB|C|394

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BS

50S ribosomal protein L31