HL_4V65_052

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGGAAACC

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_052 not in the Motif Atlas

Geometric match to HL_8KAH_003

Geometric discrepancy: 0.2974

The information below is about HL_8KAH_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89457.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

2

Unit IDs

4V65|1|BB|G|628
4V65|1|BB|G|629
4V65|1|BB|G|630
4V65|1|BB|A|631
4V65|1|BB|A|632
4V65|1|BB|A|633
4V65|1|BB|C|634
4V65|1|BB|C|635

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L15

Chain BW

50S ribosomal protein L35