HL_4V65_057

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CAUCCCG

Length

7 nucleotides

Bulged bases

4V65|1|BB|C|888

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_057 not in the Motif Atlas

Geometric match to HL_3P22_001

Geometric discrepancy: 0.2236

The information below is about HL_3P22_001

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V65|1|BB|C|885
4V65|1|BB|A|886
4V65|1|BB|U|887
4V65|1|BB|C|888
4V65|1|BB|C|889
4V65|1|BB|C|890
4V65|1|BB|G|891

Current chains

Chain BB

23S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain AF

30S ribosomal protein S13

Chain AL

30S ribosomal protein S19