HL_4V65_063

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

4V65|1|BB|A|1284, 4V65|1|BB|A|1285, 4V65|1|BB|A|1287

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_063 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.4218

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V65|1|BB|G|1281
4V65|1|BB|U|1282
4V65|1|BB|G|1283
4V65|1|BB|A|1284
4V65|1|BB|A|1285
4V65|1|BB|A|1286
4V65|1|BB|A|1287
4V65|1|BB|G|1288
4V65|1|BB|C|1289

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BG

50S ribosomal protein L17

Chain BT

50S ribosomal protein L32