HL_4V65_075

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

4V65|1|BB|C|1870

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_075 not in the Motif Atlas

Homologous match to HL_5J7L_180

Geometric discrepancy: 0.388

The information below is about HL_5J7L_180

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V65|1|BB|C|1868
4V65|1|BB|G|1869
4V65|1|BB|C|1870
4V65|1|BB|A|1871
4V65|1|BB|A|1872
4V65|1|BB|G|1873

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BZ

50S ribosomal protein L1P