HL_4V65_083

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUGACGGC

Length

8 nucleotides

Bulged bases

4V65|1|BB|A|2358, 4V65|1|BB|C|2359

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_083 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3515

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V65|1|BB|G|2355
4V65|1|BB|U|2356
4V65|1|BB|G|2357
4V65|1|BB|A|2358
4V65|1|BB|C|2359
4V65|1|BB|G|2360
4V65|1|BB|G|2361
4V65|1|BB|C|2362

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BE

50S ribosomal protein L15

Chain BP

50S ribosomal protein L27

Chain BW

50S ribosomal protein L35