HL_4V65_084

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_084 not in the Motif Atlas

Homologous match to HL_5J7L_191

Geometric discrepancy: 0.2842

The information below is about HL_5J7L_191

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V65|1|BB|C|2374
4V65|1|BB|G|2375
4V65|1|BB|A|2376
4V65|1|BB|A|2377
4V65|1|BB|A|2378
4V65|1|BB|G|2379

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BH

50S ribosomal protein L18

Chain BU

50S ribosomal protein L33