HL_4V65_090

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_090 not in the Motif Atlas

Homologous match to HL_5J7L_197

Geometric discrepancy: 0.4099

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V65|1|BB|C|2658
4V65|1|BB|G|2659
4V65|1|BB|A|2660
4V65|1|BB|G|2661
4V65|1|BB|A|2662
4V65|1|BB|G|2663

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AA

Transfer RNA; tRNA

Chain B3

50S ribosomal protein L6