HL_4V65_096

3D structure

PDB id

4V65 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome in the Pre-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

4V65|1|BB|G|411

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V65_096 not in the Motif Atlas

Homologous match to HL_4WF9_014

Geometric discrepancy: 0.5513

The information below is about HL_4WF9_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V65|1|BB|G|410
4V65|1|BB|G|411
4V65|1|BB|A|412
4V65|1|BB|C|413
4V65|1|BB|C|414
4V65|1|BB|A|415
4V65|1|BB|U|416
4V65|1|BB|C|417

Current chains

Chain BB

23S rRNA

Nearby chains