HL_4V66_038

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGAUAUGA

Length

8 nucleotides

Bulged bases

4V66|1|BB|A|91

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V66_038 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.3471

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V66|1|BB|U|87
4V66|1|BB|G|88
4V66|1|BB|A|89
4V66|1|BB|U|90
4V66|1|BB|A|91
4V66|1|BB|U|92
4V66|1|BB|G|93
4V66|1|BB|A|94

Current chains

Chain BB

23S rRNA

Nearby chains

Chain BM

50S ribosomal protein L23

Chain BO

50S ribosomal protein L24

Chain BQ

50S ribosomal protein L29