HL_4V66_081

3D structure

PDB id

4V66 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli ribosome and the tRNAs in Post-accommodation state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

ACUGGGGCGGU

Length

11 nucleotides

Bulged bases

4V66|1|BB|U|2249, 4V66|1|BB|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V66_081 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2087

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V66|1|BB|A|2247
4V66|1|BB|C|2248
4V66|1|BB|U|2249
4V66|1|BB|G|2250
4V66|1|BB|G|2251
4V66|1|BB|G|2252
4V66|1|BB|G|2253
4V66|1|BB|C|2254
4V66|1|BB|G|2255
4V66|1|BB|G|2256
4V66|1|BB|U|2257

Current chains

Chain BB

23S rRNA

Nearby chains

Chain AP

Transfer RNA; tRNA

Chain BF

50S ribosomal protein L16

Chain BP

50S ribosomal protein L27