HL_4V68_035
3D structure
- PDB id
- 4V68 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.4 Å
Loop
- Sequence
- CAGUCGGUAG
- Length
- 10 nucleotides
- Bulged bases
- 4V68|1|AW|U|16, 4V68|1|AW|C|17, 4V68|1|AW|G|18, 4V68|1|AW|G|19
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V68_035 not in the Motif Atlas
- Homologous match to HL_5E81_205
- Geometric discrepancy: 0.2171
- The information below is about HL_5E81_205
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V68|1|AW|C|13
4V68|1|AW|A|14
4V68|1|AW|G|15
4V68|1|AW|U|16
4V68|1|AW|C|17
4V68|1|AW|G|18
4V68|1|AW|G|19
4V68|1|AW|U|20
4V68|1|AW|A|21
4V68|1|AW|G|22
Current chains
- Chain AW
- E-SITE TRNA
Nearby chains
- Chain BA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: