HL_4V68_042

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGGUAGCGG

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_042 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.341

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.2

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

4V68|1|BA|C|87
4V68|1|BA|G|88
4V68|1|BA|G|89
4V68|1|BA|U|90
4V68|1|BA|A|92
4V68|1|BA|G|93
4V68|1|BA|C|94
4V68|1|BA|G|94|||A
4V68|1|BA|G|95

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B2

50S ribosomal protein L29

Chain BY

50S ribosomal protein L24