HL_4V68_050

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UUGGGAAG

Length

8 nucleotides

Bulged bases

4V68|1|BA|A|311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_050 not in the Motif Atlas

Homologous match to HL_7RQB_010

Geometric discrepancy: 0.114

The information below is about HL_7RQB_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_41998.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

69

Unit IDs

4V68|1|BA|U|305
4V68|1|BA|U|306
4V68|1|BA|G|307
4V68|1|BA|G|308
4V68|1|BA|G|309
4V68|1|BA|A|310
4V68|1|BA|A|311
4V68|1|BA|G|312

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BY

50S ribosomal protein L24