HL_4V68_057

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

4V68|1|BA|A|548

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_057 not in the Motif Atlas

Homologous match to HL_7RQB_017

Geometric discrepancy: 0.5324

The information below is about HL_7RQB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V68|1|BA|C|542
4V68|1|BA|C|543
4V68|1|BA|A|547
4V68|1|BA|A|548
4V68|1|BA|G|549
4V68|1|BA|G|551

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L13

Chain BV

50S ribosomal protein L21