HL_4V68_064

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UGAAAAG

Length

7 nucleotides

Bulged bases

4V68|1|BA|A|781, 4V68|1|BA|A|784

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_064 not in the Motif Atlas

Homologous match to HL_7A0S_023

Geometric discrepancy: 0.1152

The information below is about HL_7A0S_023

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_51020.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

11

Unit IDs

4V68|1|BA|U|779
4V68|1|BA|G|780
4V68|1|BA|A|781
4V68|1|BA|A|782
4V68|1|BA|A|783
4V68|1|BA|A|784
4V68|1|BA|G|785

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BD

50S ribosomal protein L2