HL_4V68_067

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGAUAACG

Length

8 nucleotides

Bulged bases

4V68|1|BA|U|958, 4V68|1|BA|C|961

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_067 not in the Motif Atlas

Homologous match to HL_7RQB_027

Geometric discrepancy: 0.0914

The information below is about HL_7RQB_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

4V68|1|BA|C|955
4V68|1|BA|G|956
4V68|1|BA|A|957
4V68|1|BA|U|958
4V68|1|BA|A|959
4V68|1|BA|A|960
4V68|1|BA|C|961
4V68|1|BA|G|962

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BQ

50S ribosomal protein L16