HL_4V68_069
3D structure
- PDB id
- 4V68 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.4 Å
Loop
- Sequence
- GGCUUAGAAGCAGCC
- Length
- 15 nucleotides
- Bulged bases
- 4V68|1|BA|U|1066, 4V68|1|BA|A|1070
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V68_069 not in the Motif Atlas
- Geometric match to HL_8C3A_022
- Geometric discrepancy: 0.3194
- The information below is about HL_8C3A_022
- Detailed Annotation
- Externally structured
- Broad Annotation
- Externally structured
- Motif group
- HL_96426.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
4V68|1|BA|G|1062
4V68|1|BA|G|1063
4V68|1|BA|C|1064
4V68|1|BA|U|1065
4V68|1|BA|U|1066
4V68|1|BA|A|1067
4V68|1|BA|G|1068
4V68|1|BA|A|1069
4V68|1|BA|A|1070
4V68|1|BA|G|1071
4V68|1|BA|C|1072
4V68|1|BA|A|1073
4V68|1|BA|G|1074
4V68|1|BA|C|1075
4V68|1|BA|C|1076
Current chains
- Chain BA
- 23S rRNA
Nearby chains
- Chain AY
- Transfer RNA; tRNA
- Chain BL
- 50S ribosomal protein L11
- Chain BQ
- 50S ribosomal protein L16
- Chain BZ
- 50S ribosomal protein L25
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