HL_4V68_074

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

4V68|1|BA|G|1325, 4V68|1|BA|U|1329

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_074 not in the Motif Atlas

Geometric match to HL_7RQB_034

Geometric discrepancy: 0.0633

The information below is about HL_7RQB_034

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

4V68|1|BA|G|1324
4V68|1|BA|G|1325
4V68|1|BA|U|1326
4V68|1|BA|C|1327
4V68|1|BA|G|1328
4V68|1|BA|U|1329
4V68|1|BA|C|1330

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BR

50S ribosomal protein L17

Chain BW

50S ribosomal protein L22