HL_4V68_102

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

UGAAGAAG

Length

8 nucleotides

Bulged bases

4V68|1|BA|G|2529

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_102 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1377

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

4V68|1|BA|U|2528
4V68|1|BA|G|2529
4V68|1|BA|A|2530
4V68|1|BA|A|2531
4V68|1|BA|G|2532
4V68|1|BA|A|2533
4V68|1|BA|A|2534
4V68|1|BA|G|2535

Current chains

Chain BA

23S rRNA

Nearby chains

Chain B9

50S ribosomal protein L36

Chain BH

50S ribosomal protein L6