HL_4V68_105

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

CGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_105 not in the Motif Atlas

Homologous match to HL_5J7L_197

Geometric discrepancy: 0.102

The information below is about HL_5J7L_197

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V68|1|BA|C|2658
4V68|1|BA|G|2659
4V68|1|BA|A|2660
4V68|1|BA|G|2661
4V68|1|BA|A|2662
4V68|1|BA|G|2663

Current chains

Chain BA

23S rRNA

Nearby chains

Chain AY

Transfer RNA; tRNA

Chain AZ

Elongation factor Tu-A

Chain BH

50S ribosomal protein L6