HL_4V68_124

3D structure

PDB id

4V68 (explore in PDB, NAKB, or RNA 3D Hub)

Description

T. thermophilus 70S ribosome in complex with mRNA, tRNAs and EF-Tu.GDP.kirromycin ternary complex, fitted to a 6.4 A Cryo-EM map.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.4 Å

Loop

Sequence

GCGGGACGGAAAUCCGC

Length

17 nucleotides

Bulged bases

4V68|1|BA|G|2307, 4V68|1|BA|A|2310, 4V68|1|BA|A|2311

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V68_124 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.388

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

4V68|1|BA|G|2300
4V68|1|BA|C|2301
4V68|1|BA|G|2302
4V68|1|BA|G|2303
4V68|1|BA|G|2304
4V68|1|BA|A|2305
4V68|1|BA|C|2306
4V68|1|BA|G|2307
4V68|1|BA|G|2308
4V68|1|BA|A|2309
4V68|1|BA|A|2310
4V68|1|BA|A|2311
4V68|1|BA|U|2312
4V68|1|BA|C|2313
4V68|1|BA|C|2314
4V68|1|BA|G|2315
4V68|1|BA|C|2316

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BG

50S ribosomal protein L5