HL_4V69_033
3D structure
- PDB id
- 4V69 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Ternary complex-bound E.coli 70S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 6.7 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 4V69|1|AV|C|16, 4V69|1|AV|G|18, 4V69|1|AV|G|19
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V69_033 not in the Motif Atlas
- Homologous match to HL_5B63_003
- Geometric discrepancy: 0.1497
- The information below is about HL_5B63_003
- Detailed Annotation
- tRNA D-loop
- Broad Annotation
- No text annotation
- Motif group
- HL_65478.1
- Basepair signature
- cWW-cWS-F
- Number of instances in this motif group
- 4
Unit IDs
4V69|1|AV|C|13
4V69|1|AV|A|14
4V69|1|AV|G|15
4V69|1|AV|C|16
4V69|1|AV|C|17
4V69|1|AV|U|17|||A
4V69|1|AV|G|18
4V69|1|AV|G|19
4V69|1|AV|U|20
4V69|1|AV|A|21
4V69|1|AV|G|22
Current chains
- Chain AV
- E-site tRNA Phe
Nearby chains
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BF
- 50S ribosomal protein L5
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