HL_4V69_039

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CAGUUGGGAG

Length

10 nucleotides

Bulged bases

4V69|1|AY|G|18

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V69_039 not in the Motif Atlas

Geometric match to HL_4TUE_033

Geometric discrepancy: 0.179

The information below is about HL_4TUE_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V69|1|AY|C|13
4V69|1|AY|A|14
4V69|1|AY|G|15
4V69|1|AY|U|16
4V69|1|AY|U|17
4V69|1|AY|G|18
4V69|1|AY|G|19
4V69|1|AY|G|20
4V69|1|AY|A|21
4V69|1|AY|G|22

Current chains

Chain AY

A/T-site tRNA Phe

Nearby chains

Chain AL

30S ribosomal protein S12

Chain BB

Large subunit ribosomal RNA; LSU rRNA