3D structure

PDB id
4V69 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Ternary complex-bound E.coli 70S ribosome.
Experimental method
ELECTRON MICROSCOPY
Resolution
6.7 Å

Loop

Sequence
GUAACUAUAAC
Length
11 nucleotides
Bulged bases
4V69|1|BB|A|1913
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V69_091 not in the Motif Atlas
Geometric match to HL_5TBW_049
Geometric discrepancy: 0.3301
The information below is about HL_5TBW_049
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_84702.1
Basepair signature
cWW-F-F-tHW-F-F-F-F
Number of instances in this motif group
4

Unit IDs

4V69|1|BB|G|1910
4V69|1|BB|U|1911
4V69|1|BB|A|1912
4V69|1|BB|A|1913
4V69|1|BB|C|1914
4V69|1|BB|U|1915
4V69|1|BB|A|1916
4V69|1|BB|U|1917
4V69|1|BB|A|1918
4V69|1|BB|A|1919
4V69|1|BB|C|1920

Current chains

Chain BB
23S ribosomal RNA

Nearby chains

Chain AA
Small subunit ribosomal RNA; SSU rRNA
Chain AV
Transfer RNA; tRNA
Chain AY
A/T-site tRNA Phe

Coloring options:


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