HL_4V69_106

3D structure

PDB id

4V69 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ternary complex-bound E.coli 70S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

6.7 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V69_106 not in the Motif Atlas

Homologous match to HL_5J7L_196

Geometric discrepancy: 0.1496

The information below is about HL_5J7L_196

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V69|1|BB|C|2594
4V69|1|BB|G|2595
4V69|1|BB|U|2596
4V69|1|BB|G|2597
4V69|1|BB|A|2598
4V69|1|BB|G|2599

Current chains

Chain BB

23S ribosomal RNA

Nearby chains

Chain AV

Transfer RNA; tRNA

Chain BC

50S ribosomal protein L2