HL_4V6C_044

3D structure

PDB id

4V6C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.19 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

4V6C|1|BA|G|386, 4V6C|1|BA|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6C_044 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0845

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

4V6C|1|BA|A|382
4V6C|1|BA|C|383
4V6C|1|BA|A|384
4V6C|1|BA|C|385
4V6C|1|BA|G|386
4V6C|1|BA|U|387
4V6C|1|BA|G|388
4V6C|1|BA|G|389
4V6C|1|BA|U|390
4V6C|1|BA|A|391
4V6C|1|BA|U|392

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BX

50S ribosomal protein L28