HL_4V6D_142

3D structure

PDB id

4V6D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.81 Å

Loop

Sequence

UGAAUCCAUAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6D_142 not in the Motif Atlas

Homologous match to HL_5J7L_138

Geometric discrepancy: 0.1376

The information below is about HL_5J7L_138

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68257.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

4V6D|1|DA|U|158
4V6D|1|DA|G|159
4V6D|1|DA|A|160
4V6D|1|DA|A|161
4V6D|1|DA|U|162
4V6D|1|DA|C|163
4V6D|1|DA|C|164
4V6D|1|DA|A|165
4V6D|1|DA|U|166
4V6D|1|DA|A|167
4V6D|1|DA|G|168

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DX

50S ribosomal protein L28