HL_4V6E_210

3D structure

PDB id

4V6E (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the E. coli 70S ribosome in an intermediate state of ratcheting

Experimental method

X-RAY DIFFRACTION

Resolution

3.71 Å

Loop

Sequence

GCGACGGUUGUC

Length

12 nucleotides

Bulged bases

4V6E|1|BA|A|1453, 4V6E|1|BA|C|1454, 4V6E|1|BA|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6E_210 not in the Motif Atlas

Geometric match to HL_8VTW_008

Geometric discrepancy: 0.284

The information below is about HL_8VTW_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84570.1

Basepair signature

cWW-cWW-F

Number of instances in this motif group

6

Unit IDs

4V6E|1|BA|G|1450
4V6E|1|BA|C|1451
4V6E|1|BA|G|1452
4V6E|1|BA|A|1453
4V6E|1|BA|C|1454
4V6E|1|BA|G|1455
4V6E|1|BA|G|1456
4V6E|1|BA|U|1457
4V6E|1|BA|U|1458
4V6E|1|BA|G|1459
4V6E|1|BA|U|1460
4V6E|1|BA|C|1461

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BN

50S ribosomal protein L17