HL_4V6G_146

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAGCCCGGUAG

Length

11 nucleotides

Bulged bases

4V6G|1|CC|G|18, 4V6G|1|CC|G|19, 4V6G|1|CC|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6G_146 not in the Motif Atlas

Homologous match to HL_5E81_211

Geometric discrepancy: 0.1234

The information below is about HL_5E81_211

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V6G|1|CC|C|13
4V6G|1|CC|A|14
4V6G|1|CC|G|15
4V6G|1|CC|C|16
4V6G|1|CC|C|17
4V6G|1|CC|C|17|||A
4V6G|1|CC|G|18
4V6G|1|CC|G|19
4V6G|1|CC|U|20
4V6G|1|CC|A|21
4V6G|1|CC|G|22

Current chains

Chain CC

TRNA FMET (UNMODIFIED BASES)

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA

Chain DG

50S ribosomal protein L5